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Sr Bioinformatics Software Engineer

Illumina is a biotechnology company expanding access to genomic technology to enable life-changing discoveries and transform human health through early disease detection and diagnosis.
$126,800 - $190,200
Backend
Senior Software Engineer
Hybrid
5,000+ Employees
5+ years of experience
Healthcare · Biotech

Description For Sr Bioinformatics Software Engineer

Illumina is at the forefront of genomic technology, working to make genomics accessible and impactful for billions of people worldwide. As a Sr Bioinformatics Software Engineer, you'll play a crucial role in developing and validating software that enables life-changing discoveries in human health and disease detection.

The position combines software engineering expertise with bioinformatics knowledge, requiring strong technical skills in Python, Linux, and cloud platforms (AWS/Azure/GCP). You'll work with cutting-edge technologies and workflow languages like Nextflow, Snakemake, and WDL to build and validate robust bioinformatics pipelines.

This is an opportunity to make a direct impact on healthcare and scientific discovery. You'll lead testing efforts for data analysis software, working independently while collaborating with cross-functional teams of developers and domain experts. The role involves both technical leadership and mentoring responsibilities, making it ideal for someone who wants to grow both technically and professionally.

The company offers competitive compensation ($126,800 - $190,200) and comprehensive benefits, including access to genomics sequencing, health insurance, and retirement benefits. The hybrid work environment in San Diego provides flexibility while maintaining collaborative opportunities with talented colleagues.

If you have a passion for combining software engineering with biological sciences and want to work on technology that's transforming healthcare, this role offers the perfect blend of technical challenge and meaningful impact. Join a company that's deeply committed to innovation, diversity, and making a difference in human health.

Last updated a day ago

Responsibilities For Sr Bioinformatics Software Engineer

  • Work independently in cross-functional teams to lead the testing effort for data analysis software
  • Partner with software, bioinformatics developers and domain experts in designing, performing, and improving verification tests
  • Design and Implement automated software verification framework and scripts
  • Prepare necessary test artifacts required for formal software / product release
  • Develop and execute automated and unit tests
  • Carefully analyze and report test results
  • Participate in Code and Design Reviews
  • Ensure Software Development Life Cycle procedures are followed
  • Collaborate with assay development team and ensure they well trained on using the informatics software application(s)
  • Collaborate with peers to identify opportunities for process improvement

Requirements For Sr Bioinformatics Software Engineer

Python
Linux
  • Bachelor's degree with 5 years experience, or Master's with 3 years, or PhD
  • 4+ years of experience in formal verification of software or system in a regulated environment
  • 6+ years of working experience with software or system verification & validation
  • Background in developing and maintaining Bioinformatics pipelines and workflow
  • Good knowledge of running Bioinformatics workflows in commercial cloud (AWS, Azure, GCP)
  • Skills with workflow languages like Nextflow, Snakemake, WDL
  • Ability to develop automated scripts using Python, BASH
  • Basic knowledge of Linux and CLI environment
  • Understanding of Oncology, Molecular Biology, Bioinformatics
  • Ability to manage and mentor small team
  • Proven ability to work with internal and external teams

Benefits For Sr Bioinformatics Software Engineer

Medical Insurance
Dental Insurance
Vision Insurance
401k
  • Health/dental/vision insurance
  • Retirement benefits
  • Paid time off
  • Family planning benefits
  • Access to genomics sequencing

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